PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909492.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 1928aa    MW: 208581 Da    PI: 5.2426
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909492.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-0619081928526
                      --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                      +Cr f+++G+Ck G++C+++H+
  XP_010909492.1 1908 ICR-FHENGHCKKGASCNYIHS 1928
                      688.9999*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.32E-8294354IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.6E-9303362IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.653307373IPR019787Zinc finger, PHD-finger
SMARTSM002491.1E-7309355IPR001965Zinc finger, PHD-type
CDDcd155681.01E-21309354No hitNo description
PROSITE patternPS013590310370IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.109.6E-27529618IPR003121SWIB/MDM2 domain
SuperFamilySSF475921.96E-20534613IPR003121SWIB/MDM2 domain
PfamPF022019.3E-16539612IPR003121SWIB/MDM2 domain
SMARTSM001510.001548617IPR019835SWIB domain
SMARTSM007191.0E-48673783IPR004343Plus-3 domain
PROSITE profilePS5136028.751673806IPR004343Plus-3 domain
SuperFamilySSF1590428.76E-33674803IPR004343Plus-3 domain
PfamPF031263.3E-22678781IPR004343Plus-3 domain
SuperFamilySSF552771.16E-1710171075IPR003169GYF domain
PROSITE profilePS5082916.06710221076IPR003169GYF domain
CDDcd000729.50E-1710221077No hitNo description
SMARTSM004443.4E-2010231078IPR003169GYF domain
PfamPF022131.1E-1310241068IPR003169GYF domain
Gene3DG3DSA:3.30.1490.404.9E-1810241076IPR003169GYF domain
PROSITE profilePS5010313.56319031928IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1928 aa     Download sequence    Send to blast
MGGPEEEEVH GPPPMNQLSE ENPPPPPVVG EAGILSCEWR EDREAAKGSQ LPVSPALSPS  60
SVFGEDEKCP ALETDAAATC GVAGGDDSLE QEAIQMAVDV VLERQEDPAV PGSPAVFLPP  120
SSGEDKKAPI LETDVAATGG DAEGDDVMKE DFARMAVNMV EPQVDLPCRS SPVASPSSHA  180
EDEEGPVFWP DAATTSGIAG GDDVLEVGAT RMAIDAMEPQ AEPRSLGSPS SSGGGEKKKD  240
LASETDEATI SPFGGGDAVV EEEDEQISAE ATESPIGRVR RGGGRWKRGR PQKAHVGRAL  300
VRRKEEEEVC FICFDGGDLV VCDRRGCPKV YHPSCVNRDE AFFRAKGRWN CGWHICNICE  360
KSSHYICYTC TYSLCKGCIR EARFICVRGT KGFCETCMST VMLIETNEHG NEKKDGVDFD  420
DRSSWEFLFK DYWLDLKGKL SLTLEELKRA RTPQKDSSLI SRNVESTDDL CDAKNDQQAS  480
SDSSSGHPEE RISPRKNEES IFAKKKGKKG SRKTTNKEGL AKEPENTGTS TCKDISWASD  540
ELLEFVAHMK DGDISELSQF DVQALLLEYI KRNNLRDRRR KSQIICDSRL ENLFGKSRVG  600
HFEMLKLLES HFLMKEASPL DTDDNQGGVV DPDPMDVEGN SDASIMTTSD NRRKSRRKVE  660
GKEPQTNLDD FAAIDVHNIR LIYLRRNLME DLLDDIDTFN EKVIGSFVRI RICGVGQRQD  720
VYRLVQVKGT CKAADKYKSG KKTTDVMLEI LNLDKTELIT IDIISNQEFT EEECKRLRQS  780
IKCGFISRLT VGEVQEKARA LQAVRVNDWL ESEKLRLAHL RDRASEKGRS KELRECVEKL  840
RLLNMPEDRN RRLNEVPEIH ADPHMSPDYE TAEEEEEPDS KRHVHADHYS RSRASAFLRK  900
GKELTSPGRG ISISGDNWND SRKNSNIGES SRSILTEGAS NKSASRVGIT NESSWKQGND  960
VHQTRSWEPP KTPTNATGLE TGAWDNNQHG LRPGQSSGVQ PGTPTAFLST GVAVPSNASE  1020
SEKIWHYHDP SGKIQGPFSM VQLRKWSTTG YFPTNLRIWK TFEKQEDSIL LTDALSGKFR  1080
NDLPQCEPAH NSLTDDKQNV ANWKASRNDA NLSTPGINEA AKADRFVTRP SAWSAPKTEV  1140
INPNEGGFGT SSRDQGSSKG MNAGPGQMQG WNGARTAASF TGSPYQPLSH QSSGSRGGNS  1200
GRWNGIQDHG SNWGSNKPMG SHPTSQVYDK PHPQWSSSSH QSSEDMSQVQ TSEFSNQWKN  1260
DSFNLPTAPQ LGSRDSTCEQ GALNNSLPSS ASVQPMISGR GTTPSSNEAH QSSSSSGMSS  1320
KTTMSDSVGP SGSSAVTDML KQTVTADGGN PHPAAMASMP NTAEVVDTMG SSQLSDKAVN  1380
RGKFQISSHQ KKPSAHESSM TLENLPSLEL PYGDEVIPPS TDTQLSGGLD KNQCPQSDYT  1440
CPASGSEQVS GDVLSSECSE TVPSQLNDRQ DRRVVWQGQH GLGKKWAEAH DSFADKTGKS  1500
LVDGRGSDPC SVVDARDTNL ITESDALEPE SAPQSEISSG PNLGSESLGW ASYSAPKQKP  1560
DSSCPNPPSA ENRSEQNQSP RPEPSLAAPE CINSHNLRIP SDGKCIEHLM HAPAIKMISS  1620
EWSGGANSTF GDSQNVHFVL SDGSKPLASS QCEASASVEP AQSSNAGLSA VAHVQNTFWG  1680
VAPQNPNMGP GSQGNANMNW ATTIQSNMNM GWGLIAQSNM NVSQGTPAQG FANLNMGFGA  1740
PPQANMVVNA GWVPAAPGNT NANPAWGTPF QGNPSPGTAW GAQVQGSMTV NPGWGTFPQS  1800
NTNPNPGLVT PPSGNANQNA SWGAPTQGNM DTNLSTWRSG QGNMNLTWDP SGGDMNSWNT  1860
PQAQAGDRHS GQGGSDSGHS AGRPMWNRIQ SSGGGGSSRP PSRGQRGICR FHENGHCKKG  1920
ASCNYIHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2naa_A7e-13305376472Histone-lysine N-methyltransferase, H3 lysine
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909492.10.0PREDICTED: zinc finger CCCH domain-containing protein 19-like isoform X1
TrEMBLM0SL680.0M0SL68_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P05010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP717938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding